read_data: read_data

In ShandongUniversityZhanglab/DriverRWH: DriverRWH: Discovering Cancer Driver Genes by Random Walk on a Gene Mutation Hypergraph

read_data

Description

read_data uses reads the mutation file it deletes some row(s) of the mutation data whose rowsum is zero, rownames of the remaining rows are considered possibale genes

Usage

read_data(mutation_file)

Arguments

mutation_file

the text that contains the mutation data, a gene*sample matrix with rownames being gene names and column names being sample IDs

Value

Mutation, the mutation data, rows represent genes and columns represent samples

Examples

###read_data() reads and processes the mutation data

###it deletes some row(s) of the mutation data whose rowsum is zero,
###rownames of the remaining rows are considered possibale genes

library(DriverRWH)

###place the mutation file in the current working directory and name it "mutation_file"
###to run the example code, please uncomment them
#my_file_dir=getwd()
#mutation_file=paste0(my_file_dir,"/mutation_file.txt")

#Mutation=read_data(mutation_file=mutation_file)

###the mutation data
#print(Mutation)

ShandongUniversityZhanglab/DriverRWH documentation built on May 10, 2022, 2:47 a.m.