Man pages for Shians/CellBench
Construct Benchmarks for Single Cell Analysis Methods
| all_unique | Check if all values in a vector are unique |
| any_task_errors | Check if any tasks produced errors |
| apply_methods | Apply methods |
| arrow_sep | Unicode arrow separators |
| as_pipeline_list | convert benchmark_tbl to list |
| cache_method | Create a cached function for CellBench |
| cellbench_case_study | Open vignetted containing a case study using CellBench |
| cellbench_file | Get path to CellBench packaged data |
| CellBench-package | A framework for benchmarking combinations of methods in... |
| check_class | Check class of object |
| clear_cached_datasets | Clear cached datasets |
| clear_cellbench_cache | Clear CellBench Cache |
| collapse_pipeline | Collapse benchmark_tbl into a two column summary |
| data_list | Constructor for a data list |
| filter_zero_genes | Filter out zero count genes |
| fn_arg_seq | Create a list of functions with arguments varying over a... |
| fn_list | Constructor for a function list |
| is.task_error | Check for task errors |
| keep_high_count_cells | Filter down to the highest count cells |
| keep_high_count_genes | Filter down to the highest count genes |
| keep_high_var_genes | Filter down to the most variable genes |
| load_all_data | Load CellBench Data |
| mhead | Get head of 2 dimensional object as a square block |
| print.fn_arg_seq | Print method for fn_arg_seq output |
| print.task_error | Print method for task_error object |
| sample_cells | Sample cells from a SingleCellExperiment |
| sample_genes | Sample genes from a SingleCellExperiment |
| sample_sce_data | This is data for testing functions in CellBench. |
| set_cellbench_bpparam | Set BiocParallel parameter used CellBench |
| set_cellbench_cache_path | Set CellBench cache path |
| set_cellbench_threads | Set number of threads used by CellBench |
| split_step | Split combined pipeline step |
| strip_timing | Strip timing information |
| summary.benchmark_tbl | Summary of benchmark_tbl |
| time_methods | Time methods |
| unpack_timing | Unpack timing information |
