Files in Shians/CellBench
Construct Benchmarks for Single Cell Analysis Methods
.Rbuildignore
.covrignore
.gitignore
.travis.yml
CellBench.png
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/alias.R
R/any_task_errors.R
R/apply_methods.R
R/benchmark_tbl_methods.R
R/benchmark_timing_tbl_methods.R
R/cellbench_casestudy.R
R/cellbench_file.R
R/data_list.R
R/fn_arg_seq.R
R/fn_list.R
R/is_task_error.R
R/load_data.R
R/memoise.R
R/package.R
R/print.R
R/sample_sce_data.R
R/set_options.R
R/split_step.R
R/time_methods.R
R/utils.R
R/utils_check.R
R/utils_filter.R
R/utils_sampling.R
R/zzz.R
README.md
codecov.yml
data/sample_sce_data.rda
inst/CITATION
inst/case-study/CellBenchCaseStudy.html
inst/extdata/10x_sce_sample.rds
inst/extdata/celseq_sce_sample.rds
inst/prebuilt-doc/CreatingBenchmarks.Rmd
inst/prebuilt-doc/Examples.Rmd
inst/prebuilt-doc/ImputeBenchmark.Rmd
inst/prebuilt-doc/ParameterTesting.Rmd
inst/prebuilt-doc/ParameterTesting.pdf
inst/prebuilt-doc/UsersGuide.Rmd
inst/prebuilt-doc/UsersGuide.pdf
man/CellBench-package.Rd
man/all_unique.Rd
man/any_task_errors.Rd
man/apply_methods.Rd
man/arrow_sep.Rd
man/as_pipeline_list.Rd
man/cache_method.Rd
man/cellbench_case_study.Rd
man/cellbench_file.Rd
man/check_class.Rd
man/clear_cached_datasets.Rd
man/clear_cellbench_cache.Rd
man/collapse_pipeline.Rd
man/data_list.Rd
man/filter_zero_genes.Rd
man/fn_arg_seq.Rd
man/fn_list.Rd
man/is.task_error.Rd
man/keep_high_count_cells.Rd
man/keep_high_count_genes.Rd
man/keep_high_var_genes.Rd
man/load_all_data.Rd
man/mhead.Rd
man/print.fn_arg_seq.Rd
man/print.task_error.Rd
man/sample_cells.Rd
man/sample_genes.Rd
man/sample_sce_data.Rd
man/set_cellbench_bpparam.Rd
man/set_cellbench_cache_path.Rd
man/set_cellbench_threads.Rd
man/split_step.Rd
man/strip_timing.Rd
man/summary.benchmark_tbl.Rd
man/time_methods.Rd
man/unpack_timing.Rd
tests/testthat.R
tests/testthat/test-apply_methods.R
tests/testthat/test-benchmark_tbl_methods.R
tests/testthat/test-benchmark_timing_tbl_methods.R
tests/testthat/test-cellbench_file.R
tests/testthat/test-data_list.R
tests/testthat/test-fn_arg_seq.R
tests/testthat/test-fn_list.R
tests/testthat/test-memoise.R
tests/testthat/test-set_options.R
tests/testthat/test-time_methods.R
tests/testthat/test-utils.R
tests/testthat/test-utils_check.R
tests/testthat/test-utils_filter.R
tests/testthat/test-utils_sampling.R
vignettes/.gitignore
vignettes/DataManipulation.Rmd
vignettes/Introduction.Rmd
vignettes/TidyversePatterns.Rmd
vignettes/Timing.Rmd
vignettes/WritingWrappers.Rmd
