NEWS.md

In Shians/CellBench: Construct Benchmarks for Single Cell Analysis Methods

CellBench 1.3.2

Bug Fixes

• apply_methods and time_methods now correctly produces results for custom data.frames whose columns are not sorted from left to right

CellBench 1.1.3

Bug Fixes

• Data loading functions now appear in package index and documentation

CellBench 1.1.2

Bug Fixes

• Updated make_combinations to work with tidyr 1.0.0

Modifications

• Updated the WritingWrappers vignette.
• Added a case study precompiled vignette.

CellBench 1.1.1

New Features

• Added any_task_errors() function to check if any tasks failed in benchmark tibble.

CellBench 0.99.10

• Accepted into Bioconductor.

New Features

• Added new vignettes for Tidyverse Patterns and Method Wrappers.

Modifications

• fn_arg_seq() now has a .strict argument to check if arguments supplied are actually used in the function. Default is FALSE, previously this check is always done, but it failed for functions that use methods dispatch.
• pipeline_collapse() now has a data.name argument for if the name of the dataset should be kept in the pipeline string. Useful if only one dataset is used.
• arrow_sep() now uses ascii glyphs (only left and right available) instead of unicode. Unicode arrows fail when ggplots in rmarkdown is compiled into PDF, a common enough use-case for this to be concerning.

CellBench 0.0.7

Modifications

• purrr version number requirement set to (>= 0.3.0) because of argument name change in partial()
• Documentation reorganised to clean up package documentation index.
• Added landing page for ?CellBench

CellBench 0.0.6

New Features

• Added propagation for errors.
• Added task_error class for errors.
• Added print method for task_error objects.

CellBench 0.0.5

New Features

• Added "Timing" vignette to explain time_methods.
• Changed apply_methods() to continue on errors and return error object in result column.

CellBench 0.0.4

Breaking Changes

• Changed .name arguments in time_methods() and apply_methods() to name.

New Features

• Added time_methods function.
• Added set_cellbench_bpparam for more advanced parallelism options.

CellBench 0.0.3

New Features

• Implemented parallel application of methods to benchmark_tbl, previously only worked for dataset lists.
• Added fn_list constructor.
• Added data_list constructor.

CellBench 0.0.2

Bug Fixes

• Fixed bug in apply_methods() causing it to fail when more than 1 thread is used.

Modifications

• Updated introduction vignette to describe multithreading and function caching.

CellBench 0.0.1

• Minimal functioning package created.
• Compliant with BiocCheck::BiocCheck() and goodpractice::goodpractice().

Shians/CellBench documentation built on Oct. 16, 2023, 7:54 a.m.