sample_sce_data: This is data for testing functions in CellBench.

In Shians/CellBench: Construct Benchmarks for Single Cell Analysis Methods

This is data for testing functions in CellBench.

Description

A dataset containing 200 genes and 50 cells randomly sampled from the CelSeq mRNA mixture dataset, each sample is a mixture of mRNA material from 3 different human adenocarcinoma cell lines. Useful for quick prototyping of method wrappers.

Usage

data(sample_sce_data)

Format

A SingleCellExperiment object with sample annotations in colData(sample_sce_data). The annotation contains various QC metrics as well as the cell line mixture proportions

H2228_prop

proportion of mRNA from H2228 cell line

H1975_prop

proportion of mRNA from H1975 cell line

HCC827_prop

proportion of mRNA from HCC827 cell line

See Also

load_mrna_mix_data

Shians/CellBench documentation built on Oct. 16, 2023, 7:54 a.m.