glMDSPlot: Glimma MDS Plot

In Shians/Glimma: Interactive HTML graphics

Glimma MDS Plot

Description

Glimma MDS Plot

Draw an interactive MD plot from a DGEList object with distances calculated from most variable genes.

Usage

glMDSPlot(x, ...)

Arguments

x	the matrix containing the gene expressions.
...	additional arguments.

Value

Draws a two-panel interactive MDS plot in an html page. The left panel contains the plot between two MDS dimensions, with annotations displayed on hover. The right panel contains a bar plot of the eigenvalues of each dimension, clicking on any of the bars will plot the corresponding dimension against the next dimension.

Author(s)

Shian Su, Gordon Smyth

See Also

glMDSPlot.default, glMDSPlot.DGEList

Examples

data(lymphomaRNAseq)
genotype <- relevel(lymphomaRNAseq$samples$group, "Smchd1-null")

glMDSPlot(lymphomaRNAseq, labels=1:7, groups=genotype)

Shians/Glimma documentation built on Sept. 7, 2024, 4:25 p.m.