tree: Tree-related functions
In Shicheng-Guo/lyne: Modeling the dynamics of epigenetic marks along a cell lineage trees.
Description
Usage
Arguments
Details
Value
Description
Get an example of a lineage tree. Given a lineage tree, get an edge matrix accordingly
in bottom-up order (from leaves to root).
Usage
1
2
exampleLineageTree()
getEdgeMatrix(graph,edges=FALSE)
Arguments
graph
igraph-class: Object containing the lineage tree. Needs to be a rooted tree.
edges
Logical: Should the result contain a column with the edge index in tree
corresponding to the respective row?
Details
exampleLineageTree returns the hematopoietic cell lineage tree from Bock et al. (2012).
Value
getEdgeMatrix Edge matrix in bottom-up order.
exampleLineageTree List with two components: traversal: igraph-class object containing cell lineage tree.
layout: layout for plotting the tree.
Shicheng-Guo/lyne documentation built on May 9, 2019, 1:27 p.m.
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Description Usage Arguments Details Value
Description
Get an example of a lineage tree. Given a lineage tree, get an edge matrix accordingly in bottom-up order (from leaves to root).
Usage
1 2 | exampleLineageTree()
getEdgeMatrix(graph,edges=FALSE)
|
Arguments
graph |
igraph-class: Object containing the lineage tree. Needs to be a rooted tree. |
edges |
Logical: Should the result contain a column with the edge index in |
Details
exampleLineageTree returns the hematopoietic cell lineage tree from Bock et al. (2012).
Value
getEdgeMatrix Edge matrix in bottom-up order.
exampleLineageTree List with two components: traversal: igraph-class object containing cell lineage tree.
layout: layout for plotting the tree.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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