pop_result: search allele frequency among populations and gene annotation...

In ShihChingYu/MRAT: Transcript Annotation Tool (TransAT): an R package for retrieving annotations for transcript specific genetic variants

Description

using genomic postion and ref/alt information to query gene annotation and allele frequency

Format

A data frame with 3 rows and 28 variables:

Chr

integer COLUMN_DESCRIPTION

Start

integer COLUMN_DESCRIPTION

End

double COLUMN_DESCRIPTION

Ref

character COLUMN_DESCRIPTION

Alt

character COLUMN_DESCRIPTION

Func.knownGene

character COLUMN_DESCRIPTION

Gene.knownGene

character COLUMN_DESCRIPTION

GeneDetail.knownGene

character COLUMN_DESCRIPTION

ExonicFunc.knownGene

character COLUMN_DESCRIPTION

AAChange.knownGene

character COLUMN_DESCRIPTION

gnomAD_exome_ALL_Ref_freq

double COLUMN_DESCRIPTION

gnomAD_exome_ALL_Alt_freq

double COLUMN_DESCRIPTION

gnomAD_exome_AFR_Ref_freq

double COLUMN_DESCRIPTION

gnomAD_exome_AFR_Alt_freq

double COLUMN_DESCRIPTION

gnomAD_exome_AMR_Ref_freq

double COLUMN_DESCRIPTION

gnomAD_exome_AMR_Alt_freq

double COLUMN_DESCRIPTION

gnomAD_exome_ASJ_Ref_freq

double COLUMN_DESCRIPTION

gnomAD_exome_ASJ_Alt_freq

double COLUMN_DESCRIPTION

gnomAD_exome_EAS_Ref_freq

double COLUMN_DESCRIPTION

gnomAD_exome_EAS_Alt_freq

double COLUMN_DESCRIPTION

gnomAD_exome_FIN_Ref_freq

double COLUMN_DESCRIPTION

gnomAD_exome_FIN_Alt_freq

double COLUMN_DESCRIPTION

gnomAD_exome_NFE_Ref_freq

double COLUMN_DESCRIPTION

gnomAD_exome_NFE_Alt_freq

double COLUMN_DESCRIPTION

gnomAD_exome_SAS_Ref_freq

double COLUMN_DESCRIPTION

gnomAD_exome_SAS_Alt_freq

double COLUMN_DESCRIPTION

gnomAD_exome_OTH_Ref_freq

double COLUMN_DESCRIPTION

gnomAD_exome_OTH_Alt_freq

double COLUMN_DESCRIPTION

ShihChingYu/MRAT documentation built on May 31, 2021, 12:58 p.m.