Files in ShixiangWang/VSHunter
Capture Variation Signatures from Genomic Data

.Rbuildignore

.gitignore

.travis.yml

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DESCRIPTION

LICENSE

NAMESPACE

R/VSHunter.R R/call_exec.R R/cnv_helper.R R/cnv_main.R R/data.R R/plot.R R/snv_main.R R/zzz.R README.Rmd README.md TODO.md

VSHunter.Rproj

appveyor.yml

codecov.yml

data/centromeres.hg19.rda

data/centromeres.hg38.rda

data/chromsize.hg19.rda

data/chromsize.hg38.rda

docs/LICENSE-text.html

docs/LICENSE.html

docs/articles/VSHunter.html

docs/articles/VSHunter_files/figure-html/unnamed-chunk-10-1.png

docs/articles/VSHunter_files/figure-html/unnamed-chunk-14-1.png

docs/articles/VSHunter_files/figure-html/unnamed-chunk-15-1.png

docs/articles/VSHunter_files/figure-html/unnamed-chunk-16-1.png

docs/articles/VSHunter_files/figure-html/unnamed-chunk-9-1.png

docs/articles/cnPattern.html

docs/articles/index.html

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/autoCapture_Signatures.html

docs/reference/centromeres.hg19.html

docs/reference/centromeres.hg38.html

docs/reference/choose_nSignatures.html

docs/reference/chromsize.hg19.html

docs/reference/chromsize.hg38.html

docs/reference/cnv_autoCaptureSignatures.html

docs/reference/cnv_chooseSigNumber.html

docs/reference/cnv_derivefeatures.html

docs/reference/cnv_extractSignatures.html

docs/reference/cnv_fitMixModels.html

docs/reference/cnv_generateSbCMatrix.html

docs/reference/cnv_getLengthFraction.html

docs/reference/cnv_pipe.html

docs/reference/cnv_plotDistributionProfile.html

docs/reference/cnv_plotFeatureDistribution.html

docs/reference/cnv_plotMixComponents.html

docs/reference/cnv_plotSignatures.html

docs/reference/cnv_quantifySigExposure.html

docs/reference/cnv_readprofile.html

docs/reference/derive_features.html

docs/reference/extract_Signatures.html

docs/reference/fit_mixModels.html

docs/reference/generate_sbcMatrix.html

docs/reference/index.html

docs/reference/quantify_Signatures.html

docs/reference/read_copynumbers.html

inst/extdata/cnv_pipe.R

inst/extdata/example_cn_list.RData

inst/extdata/feat_sig_mat.rds

man/VSHunter.Rd man/centromeres.hg19.Rd man/centromeres.hg38.Rd man/chromsize.hg19.Rd man/chromsize.hg38.Rd man/cnv_autoCaptureSignatures.Rd man/cnv_chooseSigNumber.Rd man/cnv_derivefeatures.Rd man/cnv_extractSignatures.Rd man/cnv_fitMixModels.Rd man/cnv_generateSbCMatrix.Rd man/cnv_getLengthFraction.Rd man/cnv_pipe.Rd man/cnv_plotDistributionProfile.Rd man/cnv_plotFeatureDistribution.Rd man/cnv_plotMixComponents.Rd man/cnv_plotSignatures.Rd man/cnv_quantifySigExposure.Rd man/cnv_readprofile.Rd man/nmf_extract_group.Rd man/snv_extractSignatures.Rd man/snv_plotSignatures.Rd man/snv_readprofile.Rd man/snv_signatureEnrichment.Rd man/snv_trinucleotideMatrix.Rd tests/testthat.R tests/testthat/test_general.R vignettes/VSHunter.Rmd

ShixiangWang/VSHunter documentation built on June 27, 2019, 4:56 p.m.

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ShixiangWang/VSHunter
Capture Variation Signatures from Genomic Data

Files in ShixiangWang/VSHunter
Capture Variation Signatures from Genomic Data

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ShixiangWang/VSHunter Capture Variation Signatures from Genomic Data

Files in ShixiangWang/VSHunter Capture Variation Signatures from Genomic Data

R Package Documentation

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ShixiangWang/VSHunter
Capture Variation Signatures from Genomic Data

Files in ShixiangWang/VSHunter
Capture Variation Signatures from Genomic Data