cnv_plotSignatures: Plot CNV signatures

In ShixiangWang/VSHunter: Capture Variation Signatures from Genomic Data

Description

Plot CNV signature from multiple result objects from VSHunter package.

Usage

cnv_plotSignatures(Res = NULL, contributions = FALSE, color = NULL,
  patient_order = NULL, font_size = 1.2, show_title = TRUE,
  axis_lwd = 2, title_size = 1.3, show_barcodes = FALSE,
  barcode_size = 0.5, yaxisLim = 0.3, ...)

Arguments

Res	a result list generated from CNV signature pipeline or a NMFfitX object from NMF package.
contributions	if TRUE, plot contributions instead of signatures.
color	user custom colors.
patient_order	user custom patient order.
font_size	font size.
show_title	if TRUE, show title.
axis_lwd	line width of axis.
title_size	title size.
show_barcodes	if TRUE, show barcode.
barcode_size	barcode size when plot contribution.
yaxisLim	limit of y axis.
...	other options pass to barplot.

Value

Nothing

See Also

Other CNV analysis functions: cnv_autoCaptureSignatures, cnv_chooseSigNumber, cnv_derivefeatures, cnv_extractSignatures, cnv_fitMixModels, cnv_generateSbCMatrix, cnv_getLengthFraction, cnv_pipe, cnv_plotDistributionProfile, cnv_plotFeatureDistribution, cnv_plotMixComponents, cnv_quantifySigExposure, cnv_readprofile

ShixiangWang/VSHunter documentation built on June 27, 2019, 4:56 p.m.