inst/tests/step0-setup-global-setting.R

In ShixiangWang/iProfile: integrated cancer Profile using multiple datasets

# Function
#   step 0: set up global setting for analyzing scripts


###### Set up work directory #########
# setwd("~/projects/iProfile/")
# setwd("~/Projects/iProfile/")
#####################################

###### tests and data directory ########
test_dir <- system.file(pattern="tests",package="iProfile")
data_dir <- system.file(pattern="tests/data",package="iProfile")
########################################

##### GSE IDs for preprocessed raw data ####
GEO_IDs <- c("GSE19188", "GSE10072",
             "GSE31210", "GSE7670" ,
             "GSE68465", "GSE27716",
             "GSE17475", "GSE43580",
             "GSE50081", "GSE37745", "GSE28571")
############################################