mmLogLik: Function to calculate maximum likelihood

In ShojiTaniguchi/timsync: Mixed model for time series with synchronization

Description

mmLogLik function is to calculate the maximum likelihood values under the estimated parameters. The appropriate usage is to calculate the ML under the REML parameters estiamted by the timixCov or timix function.

Usage

mmLogLik(rho, omega, dat, y, f, r, grp, w, b, Ve, Vu, method)

Arguments

rho	parameter for serial correlation
omega	parameter for synchronization
dat	data for the analysis
y	column number of the dependent variable
f	column number of the fixed effects
r	column number of the random effects
grp	column number of the group
w	weight vector for the random effects variance
Ve	Variance of the residuals
Vu	Variance of the random effects
method	"ML" or "REML"

References

Hamazaki, K., & Iwata, H. (2020). RAINBOW: Haplotype-based genome-wide association study using a novel SNP-set method. PLoS computational biology, 16(2), e1007663.

ShojiTaniguchi/timsync documentation built on Oct. 10, 2020, 3:33 p.m.