mtbl: metabolite data in Sudeepa's analysis

In ShouyeLiu/metaboliteUtility:

Description

metabolite data in Sudeepa's analysis

Usage

mtbl

Format

A data frame with 870 observations and 61 variables:

subject

chr "SSRI007" "SSRI007" "SSRI007" "SSRI051"...

time

chr "Baseline" "week4" "week8" "Baseline" ...

Gender

Factor w/ 2 levels "F","M": 1 1 1 2 2 2 1 1 1 1 ...

RMC

Factor w/ 2 levels "No","Yes": NA NA NA 2 2 2 2 2 2 1 ...

Age

num 54.3 54.3 54.3 37.3 37.3 ...

HAMD_baseline

int 33 33 33 17 17 17 16 16 16 31 ...

HAMD_week8

int 12 12 12 1 1 1 4 4 4 24 ...

CYS

num 0.1725 -0.0803 -0.7347 0.1095 0.3133 ...

MET

num 0.0157 0.7803 0.6911 -0.3285 0.4899 ...

G

num 1.716 1.51 2.176 0.788 -1.544 ...

GR

num -0.533 -1.087 -1.73 -0.412 0.851 ...

HX

num 0.887 2.66 3.028 1.809 1.26 ...

PXAN

num 0.677 0.806 1.132 -0.407 -2.032 ...

URIC

num 0.747 0.746 0.849 0.845 0.788 ...

XAN

num 0.323 1.779 1.867 1.413 0.743 ...

XANTH

num 0.125 0.836 0.187 -0.205 0.321 ...

G_by_GR

num 1.761 1.651 2.407 0.837 -1.646 ...

XAN_by_G

num -1.652 -0.988 -1.641 -0.365 1.81 ...

GR_by_XANTH

num -0.278 -1.1097 -0.6436 0.0731 -0.115 ...

XAN_by_XANTH

num 0.0426 0.0271 0.6512 0.8096 0.0465 ...

PXAN_by_XANTH

num 0.414 -0.038 0.697 -0.121 -1.706 ...

PXAN_by_XAN

num 0.4575 -0.0783 0.1726 -0.9918 -2.1363 ...

URIC_by_XAN

num -0.00292 -1.40964 -1.45208 -1.01537 -0.39179 ...

HX_by_XAN

num 0.712 1.701 2.021 1.048 0.859 ...

ATOCO

num 1.584 0.861 0.463 -0.89 -0.403 ...

DTOCO

num 0.7451 0.1183 -0.0741 -0.148 0.1376 ...

GTOCO.A

num 0.775 -0.164 -0.223 -0.261 0.346 ...

3OHKY

num -0.1324 0.1354 -0.1722 0.0701 0.0748 ...

3OHKY.b

num 0.1677 0.0301 1.5402 0.2047 -0.3073 ...

5HIAA

num 0.402 0.137 1.161 -0.586 -0.316 ...

5HT

num -0.515 -0.444 -0.407 1.004 -1.052 ...

5HTP

num 1.323 1.399 1.851 -0.483 -1.794 ...

I3AA

num -0.128 -0.254 0.347 -1.211 -0.207 ...

KYN

num 0.0761 0.3037 0.5247 0.2234 -0.0779 ...

TRP

num -0.2272 -0.253 -0.3045 0.1017 0.0854 ...

I3AA_by_TRP

num -0.0253 -0.1406 0.4871 -1.263 -0.2468 ...

5HTP_by_TRP

num 1.333 1.411 1.865 -0.488 -1.788 ...

KYN_by_TRP

num 0.236 0.475 0.726 0.143 -0.136 ...

KYN_by_3OHKY

num 0.223 0.118 0.677 0.121 -0.158 ...

KYN_by_3OHKY.b

num -0.1528 0.0278 -1.4376 -0.1617 0.2921 ...

5HIAA_by_TRP

num 0.467 0.241 1.183 -0.573 -0.323 ...

5HIAA_by_5HTP

num -1.249 -1.373 -1.64 0.376 1.736 ...

5HT_by_5HTP

num 1.408 1.435 1.805 -0.944 -0.986 ...

5HIAA_by_5HT

num 0.601 0.459 0.711 -1.117 0.91 ...

4HPAC

num -1.22262 -0.04903 1.62482 -0.7352 0.00609 ...

4HPLA

num -1.104 -0.88 0.184 -0.517 0.11 ...

HGA

num -0.027 0.6542 0.4525 0.0959 0.1155 ...

HVA

num 0.353 0.319 1.578 -0.926 -0.188 ...

MHPG

num 1.664 1.258 0.302 0.951 0.163 ...

TYR

num 0.243 1.022 0.768 -0.283 0.372 ...

VMA

num -0.61 -0.228 -1.349 -0.15 0.264 ...

HVA_by_TYR

num 0.222 -0.153 1.134 -0.738 -0.339 ...

HGA_by_TYR

num -0.10805 0.37705 0.24108 0.19747 0.00464 ...

4HPAC_by_TYR

num -1.34 -0.566 1.23 -0.589 -0.182 ...

MHPG_by_TYR

num 1.154 0.327 -0.261 0.934 -0.113 ...

VMA_by_TYR

num -0.7055 -0.5839 -1.6397 -0.0558 0.142 ...

4HBAC

num 0.195 1.182 0.182 0.419 -1.569 ...

AMTRP

num 0.6728 -0.6783 0.7083 -0.0306 0.6328 ...

I3PA

num -0.5847 -0.7796 0.1097 -0.3721 0.0578 ...

SA

num 0.4771 0.0348 3.332 -0.7776 -1.0345 ...

THEOPHYLINE

num 0.509 0.752 1.145 -0.379 -1.639 ...

ShouyeLiu/metaboliteUtility documentation built on May 6, 2019, 9:07 a.m.