Files in Simon-Coetzee/footprintR
StatePaintR: a tool for creating and documenting reproducible chromatin state annotations from StateHub
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/prg.R
R/statepaintr.R
R/statepaintr_support.R
README.md
StatePaintR.Rproj
footprintR.Rproj
inst/extdata/E119-DNase.macs2.narrowPeak.gz
inst/extdata/E119-H3K27ac.narrowPeak.gz
inst/extdata/E119-H3K27me3.gappedPeak.gz
inst/extdata/E119-H3K27me3.narrowPeak.gz
inst/extdata/E119-H3K36me3.gappedPeak.gz
inst/extdata/E119-H3K4me1.narrowPeak.gz
inst/extdata/E119-H3K4me3.narrowPeak.gz
inst/extdata/E119-H3K9me3.gappedPeak.gz
inst/extdata/heart.states.rda
inst/extdata/manifest.hmec.txt
inst/extdata/poised.promoter.model.rda
inst/extdata/vista.heart.enhancers.rda
man/ExportStatePaintR.Rd
man/PRG.Rd
man/PaintStates.Rd
man/PlotStates.Rd
man/abstractionLayer.Rd
man/calc_auprg.Rd
man/create_prg_curve.Rd
man/decisionMatrix-class.Rd
man/decisionMatrix.Rd
man/doNotScore.Rd
man/doNotSplit.Rd
man/get.decision.matrix.Rd
man/precision_gain.Rd
man/prg_convex_hull.Rd
man/recall_gain.Rd
man/stateColors.Rd
vignettes/StatePaintR_Analysis.Rmd
