abstractionLayer: abstractionLayer

In Simon-Coetzee/footprintR: StatePaintR: a tool for creating and documenting reproducible chromatin state annotations from StateHub

Description

abstractionLayer

Usage

abstractionLayer(object)

Arguments

object

of class decisionMatrix

Details

In the abstraction layer one may indicate if a functional category should not be used for scoring states. This is done by placing an asterisk at the end of it's name (e.g. Regulatory*). One may also specify that a certain type of functional category never be split into smaller units by its overlapping with other features. This is done by placing the name of the functional category in square brackets (e.g. [Core])

Value

a list; A description of the relationship between the precise data type (e.g. a chromatin mark like H3K27ac) and feature describing the functional category in the decision.matrix (e.g. Regulatory).

Examples

load(system.file("extdata", "poised.promoter.model.rda", package = "StatePaintR"))
poised.promoter.model
abstractionLayer(poised.promoter.model)

Simon-Coetzee/footprintR documentation built on May 9, 2019, 1:31 p.m.