Man pages for Simon-Coetzee/footprintR
StatePaintR: a tool for creating and documenting reproducible chromatin state annotations from StateHub
| abstractionLayer | abstractionLayer |
| calc_auprg | Calculate area under the Precision-Recall-Gain curve |
| create_prg_curve | Precision-Recall-Gain curve |
| decisionMatrix | decisionMatrix |
| decisionMatrix-class | decisionMatrix class |
| doNotScore | doNotScore |
| doNotSplit | doNotSplit |
| ExportStatePaintR | Write StatePaintR object to bedfiles |
| get.decision.matrix | Retrieve Decision Matrix from StateHub |
| PaintStates | Run a StatePaintR decisionMatrix against a group of files... |
| PlotStates | PlotStates - plotting the results of PaintStates |
| precision_gain | Precision Gain |
| PRG | PRG - generate a Precision Recall Gain object to show... |
| prg_convex_hull | Create the convex hull of the Precision-Recall-Gain curve |
| recall_gain | Recall Gain |
| stateColors | stateColors |
