gbm.rsb: Representativeness Surface Builder

In SimonDedman/gbm.auto: Automated Boosted Regression Tree Modelling and Mapping Suite

Representativeness Surface Builder

Description

Loops through explanatory variables comparing their histogram in 'samples' to their histogram in 'grids' to see how well the explanatory variable range in samples represents the range being predicted to in grids. Assigns a representativeness score per variable per site in grids, and takes the average score per site if there's more than 1 expvar. Saves this to a CSV; it's plotted by gbm.map if called in gbm.auto. This shows you which areas have the most and least representative coverage by samples, therefore where you can have the most/least confidence in the predictions from gbm.predict.grids. Can be called directly, and choosing a subset of expvars allows one to see their individual / collective representativeness.

Usage

gbm.rsb(samples, grids, expvarnames, gridslat, gridslon)

Arguments

samples	Data frame with response and explanatory variables.
grids	Data frame of (more/different) explanatory variables and no response variable, to be predicted to by gbm.predict.grids.
expvarnames	Vector of column names of explanatory variables being tested. Can be length 1. Names must match in samples and grids.
gridslat	Column number for latitude in 'grids'.
gridslon	Column number for longitude in 'grids'.

Value

Gridded data table of representativeness values which is then mapped with gbm.map and also saved as a csv

Author(s)

Simon Dedman, [e-mail]

Examples

data(samples)
data(grids)
rsbdf_bin <- gbm.rsb(samples, grids, expvarnames = names(samples[c(4:8, 10)])
, gridslat = 2, gridslon = 1)

SimonDedman/gbm.auto documentation built on Oct. 9, 2024, 8:57 p.m.