collapse_snps_into_genes_by_impact: Collapse SNPs into the gene(s) which they are from and by...

In Snitkin-Lab-Umich/prewas: Data Pre-Processing for Bacterial Genome-Wide Association Studies

Collapse SNPs into the gene(s) which they are from and by snpeff impcat

Description

Collapse SNPs into the gene(s) which they are from and by snpeff impcat

Usage

collapse_snps_into_genes_by_impact(
  bin_mat,
  gene_vec,
  predicted_impact,
  snpeff_grouping
)

Arguments

bin_mat	Matrix.
gene_vec	Character. Vector of gene names.
predicted_impact	Character. Vector of predicted functional impacts.
snpeff_grouping	Character. Vector or single string of impacts of interest.

Value

a list of gene_mats, collapsed by gene and snpeff impact

Snitkin-Lab-Umich/prewas documentation built on April 23, 2023, 8:22 p.m.