vcf: Nucleotide variants in example genome samples
In Snitkin-Lab-Umich/prewas: Data Pre-Processing for Bacterial Genome-Wide Association Studies
vcf R Documentation
Nucleotide variants in example genome samples
Description
An example dataset containing 326 variants from 14 genome samples.
Usage
vcf
Format
vcfR class object with three sections:
- meta
The metadata for the VCF file including the file format version
number
- fix
A character matrix with 326 rows and 8 columns. Contains
information on chromosome (CHROM), genome position (POS), reference genome
allele (REF), and alternative allele (ALT)
- gt
A character matrix with 326 rows and 15 columns. Presence/absence
for each variant defined in fix. Colnames are sample IDs.
Snitkin-Lab-Umich/prewas documentation built on April 23, 2023, 8:22 p.m.
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| vcf | R Documentation |
Nucleotide variants in example genome samples
Description
An example dataset containing 326 variants from 14 genome samples.
Usage
vcf
Format
vcfR class object with three sections:
- meta
The metadata for the VCF file including the file format version number
- fix
A character matrix with 326 rows and 8 columns. Contains information on chromosome (CHROM), genome position (POS), reference genome allele (REF), and alternative allele (ALT)
- gt
A character matrix with 326 rows and 15 columns. Presence/absence for each variant defined in fix. Colnames are sample IDs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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