README.md
In SteRoe/EpiVisR: A Tool for Exploratory Data Analysis and Visualisation within EWAS
EpiVisR: A Tool for Exploratory Data Analysis and Visualisation within Epigenome Wide Methylation Analyses (EWAS)
EpiVisR is a tool for visualisation of differentially methylated probes (DMP).
The EpiVisR package is designed to visualize results from EWAS analyses. It supports the user by providing
- Manhattan and volcano plots for CpG selection;
- Trait Methylation plots;
- Methylation profile plots and
- Correlation plots.
Installation
library('remotes')
install_github('SteRoe/EpiVisR')
Usage
Point your working directory to the location with your files to visualize. This folder should also contain a valid yml-file with all necessary settings for
betaFileName
traitFileName
genderFileName
dataDir
EWAScatalogFileName
baseURL_EWASDataHub
baseURL_MRCEWASCatalog
probeAttribut
mergeAttribut
genderAttribut
genderFemaleValue
genderMaleValue
An example is given in the ./inst/extdata/ folder.
Detailed explanations of data structures are in the vignette.
setwd("your.working.directory")
Start the App using: EpiVisR::EpiVisRApp()
License
SteRoe/EpiVisR documentation built on Jan. 11, 2025, 1:14 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
EpiVisR: A Tool for Exploratory Data Analysis and Visualisation within Epigenome Wide Methylation Analyses (EWAS)
EpiVisR is a tool for visualisation of differentially methylated probes (DMP).
The EpiVisR package is designed to visualize results from EWAS analyses. It supports the user by providing - Manhattan and volcano plots for CpG selection; - Trait Methylation plots; - Methylation profile plots and - Correlation plots.
Installation
library('remotes') install_github('SteRoe/EpiVisR')
Usage
Point your working directory to the location with your files to visualize. This folder should also contain a valid yml-file with all necessary settings for
betaFileName traitFileName genderFileName dataDir EWAScatalogFileName baseURL_EWASDataHub baseURL_MRCEWASCatalog probeAttribut mergeAttribut genderAttribut genderFemaleValue genderMaleValue
An example is given in the ./inst/extdata/ folder. Detailed explanations of data structures are in the vignette. setwd("your.working.directory") Start the App using: EpiVisR::EpiVisRApp()
License
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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