plotlyPcPForDMP: Plots the near range of a DMR

In SteRoe/EpiVisR: A Tool for Exploratory Data Analysis and Visualisation within EWAS

Plots the near range of a DMR

Description

plots the near range of a DMR in a parallel coordinate plot and gives a plotly object back

Usage

plotlyPcPForDMP(
  DMPNearRange,
  probe,
  resultDataSingleTrait,
  annotation,
  selection,
  shortlabel = TRUE
)

Arguments

DMPNearRange	a data.frame containing row.names(ID), IDs (ID_Kind), sex, trait and cgs around probe
probe	probe (in the center), that the parallel coordinate plot should show; cg number
resultDataSingleTrait	trait original methylation data as data.frame: probeID, BETA, SE, P_VAL, FDR, DeltaMeth, N
annotation	annotation data (pre loaded); the annotation from meffil
selection	a list of cg numbers to mark within the methylation profile plot
shortlabel	if TRUE only the cg number is plotted into the methylation profile plot

Value

plotly object

SteRoe/EpiVisR documentation built on Jan. 11, 2025, 1:14 a.m.