| alignLan | Align images using landmarks |
| alignReg | Aligns images using 'niftyreg' utilities for automated image... |
| colorChecker | Calibrate images using ColorChecker. |
| colorChecker_customGray | Calibrate images using ColorChecker. |
| colorChecker_half | Calibrate images using (right) half of ColorChecker. Only... |
| createPhenotype | Plot color pattern prediction for specified PCA values |
| createTarget | Create a target image (RasterStack) from a polygon. |
| extdata | External patternize data |
| GMMImage | 'GMM' clustering of image imported as a RasterStack. |
| imageList | imageList |
| kImage | 'kmeans' clustering of image imported as a RasterStack. This... |
| kImageHSV | 'kmeans' clustering of image imported as a RasterStack. This... |
| lanArray | Build landmark array for 'Morpho'. |
| landmarkArray | landmarkArray |
| landmarkList | landmarkList |
| makeList | Build list of landmarks or RasterStacks from images using... |
| maskOutline | Intersects a RasterStack with an outline. Everything outside... |
| patArea | This fucntion calculates the area in which the color pattern... |
| patGMM | Extract colors using GMM clustering (for pre-aligned images). |
| patK | Extract colors using k-means clustering (for pre-aligned... |
| patK_HSV | Extract colors using k-means clustering (for pre-aligned... |
| patLanHSV | Aligns images usings transformations obtained from fixed... |
| patLanK | Aligns images usings transformations obtained from fixed... |
| patLanK_HSV | Aligns images usings transformations obtained from fixed... |
| patLanRGB | Aligns images usings transformations obtained from fixed... |
| patLanW | Extracts color pattern from landmark transformed image using... |
| patPCA | This function transforms the individual color pattern rasters... |
| patRDA | This function transforms the individual color pattern rasters... |
| patRegHSV | Aligns images using 'niftyreg' utilities for automated image... |
| patRegK | Aligns images using 'niftyreg' utilities for automated image... |
| patRegK_HSV | Aligns images using 'niftyreg' utilities for automated image... |
| patRegRGB | Aligns images using 'niftyreg' utilities for automated image... |
| patRegW | Aligns images using 'niftyreg' utilities for automated image... |
| patternize | patternize - An R package for quantifying color pattern... |
| plotHeat | Plots the color pattern heatmaps from 'sumRaster' output. |
| plotRasterstackAsImage | Plot rasterStack as image. |
| rasterList_lanK | rasterList_lanK |
| rasterList_lanRGB | rasterList_lanRGB |
| rasterList_regK | rasterList_regK |
| rasterList_regRGB | rasterList_regRGB |
| redRes | Reduce the resolution of an image imported as a RasterStack... |
| sampleLandmarks | Sample landmarks in an image. |
| sampleRGB | Interactive function to sample RGB value from pixel or square... |
| setMask | Interactive function to to draw an outline for masking. |
| sumRaster | This function sums the individual color pattern RasterLayes... |
