makeList: Build list of landmarks or RasterStacks from images using...

In StevenVB12/patternize: Quantification of Color Pattern Variation

Build list of landmarks or RasterStacks from images using filepath and file extension.

Description

Build list of landmarks or RasterStacks from images using filepath and file extension.

Usage

makeList(
  IDlist,
  type,
  prepath = NULL,
  extension = NULL,
  format = "imageJ",
  tpsFile = NULL,
  skipLandmark = NULL
)

Arguments

IDlist	List of sample IDs.
type	'landmark' or 'image' depending on what type of list to make.
prepath	Prepath (default = NULL).
extension	Extension (default = NULL).
format	ImageJ (Fiji) or tps format (default = 'imageJ').
tpsFile	Provide filename of tps file ff format is 'tps'.
skipLandmark	Vector of rownumbers of landmarks to skip.

Value

Landmark or RasterStack list.

Examples

IDlist <- c('BC0077','BC0071','BC0050','BC0049','BC0004')

prepath <- system.file("extdata",  package = 'patternize')
extension <- '_landmarks_LFW.txt'

landmarkList <- makeList(IDlist, 'landmark', prepath, extension)

extension <- '.jpg'
imageList <- makeList(IDlist, 'image', prepath, extension)

StevenVB12/patternize documentation built on Nov. 2, 2023, 8:01 p.m.