Man pages for StevenVB12/patternize
Quantification of Color Pattern Variation

colorCheckerCalibrate images using ColorChecker.
createTargetCreate a target image (RasterStack) from a polygon.
extdataExternal patternize data
imageListimageList
kImage'kmeans' clustering of image imported as a RasterStack. This...
lanArrayBuild landmark array for 'Morpho'.
landmarkArraylandmarkArray
landmarkListlandmarkList
makeListBuild list of landmarks or RasterStacks from images using...
maskOutlineIntersects a RasterStack with an outline. Everything outside...
patAreaThis fucntion calculates the area in which the color pattern...
patLanKAligns images usings transformations obtained from fixed...
patLanRGBAligns images usings transformations obtained from fixed...
patLanWExtracts color pattern from landmark transformed image using...
patPCAThis function transforms the individual color pattern rasters...
patRDAThis function transforms the individual color pattern rasters...
patRegKAligns images using 'niftyreg' utilities for automated image...
patRegRGBAligns images using 'niftyreg' utilities for automated image...
patRegWAligns images using 'niftyreg' utilities for automated image...
patternizepatternize - An R package for quantifying color pattern...
plotHeatPlots the color pattern heatmaps from 'sumRaster' output.
rasterList_lanKrasterList_lanK
rasterList_lanRGBrasterList_lanRGB
rasterList_regKrasterList_regK
rasterList_regRGBrasterList_regRGB
redResReduce the resolution of an image imported as a RasterStack...
sampleLandmarksSample landmarks in an image.
sampleRGBInteractive function to sample RGB value from pixel or square...
sumRasterThis function sums the individual color pattern RasterLayes...
StevenVB12/patternize documentation built on May 4, 2018, 2:22 p.m.