plot_situations: Generic plotting function for all models

In SticsRPacks/CroPloteR: A Package to Analyze Crop Model Simulations Outputs with Plots and Statistics

Generic plotting function for all models

Description

Plots simulation outputs for one or several situations with or without observations, eventually grouped by a model version (or any group actually).

Usage

plot_situations(
  ...,
  obs = NULL,
  obs_sd = NULL,
  type = c("dynamic", "scatter"),
  select_dyn = c("sim", "common", "obs", "all"),
  select_scat = c("sim", "res"),
  var = NULL,
  title = NULL,
  all_situations = TRUE,
  overlap = NULL,
  successive = NULL,
  shape_sit = c("none", "txt", "symbol", "group"),
  situation_group = NULL,
  reference_var = NULL,
  force = FALSE,
  verbose = TRUE,
  formater
)

Arguments

...	Simulation outputs (each element= model version), each being a named list of data.frame for each situation. See examples.
obs	A list (each element= situation) of observations data.frames (named by situation)
obs_sd	A list (each element= situation) of standard deviations of observations data.frames (named by situation)
type	The type of plot requested, either "dynamic" (date in X, variable in Y) or scatter (simulated VS observed)
select_dyn	Which data to plot when type= "dynamic"? See details.
select_scat	Which data to plot when type= "scatter"? See details.
var	A vector of variables that should be displayed on the graph.
title	A vector of plot titles, named by situation. Use the situation name if NULL, recycled if length one.
all_situations	Boolean (default = TRUE). If TRUE, plot all situations on the same graph.
overlap	A list of lists containing the variables to represent on the same graph when type = "dynamic".
successive	A list of lists containing the situations to be represented as a contiguous sequence when type = "dynamic" (implies that the situations are correctly ordered).
shape_sit	Shape to differentiate between situations when all_situations= TRUE. See details.
situation_group	A list of lists of situations to gather when shape_sit= "group".
reference_var	Variable selected on x-axis when type is scaétter and select_scat is res. It is possible to select between observation and simulation of the reference variable. (examples : reference_var = "lai_n_obs", reference_var = "mafruit_sim")
force	Continue if the plot is not possible ? E.g. no observations for scatter plots. If TRUE, return NULL, else return an error (default).
verbose	Boolean. Print information during execution.
formater	The function used to format the models outputs and observations in a standard way. You can design your own function that format one situation and provide it here (see plot_generic_situation() and format_cropr() for more information).

Details

The select_dyn argument can be:

• "sim" (the default): all variables with simulations outputs, and observations when there are some

• "common": variables with simulations outputs and observations in common

• "obs": all variables with observations, and simulations outputs when there are some

• "all": all variables with any observations or simulations outputs

The select_scat argument can be:

• "sim" (the default): plots observations in X and simulations in Y.

• "res": plots observations in X and residuals(observations-simulations)in Y.

The shape_sit argument can be:

• "none" (the default): Same shape for all situations.

• "txt": Writes the name of the situation above each point.

• "symbol": One shape for each situation.

• "group": One shape for each group of situations described in situation_group.

Value

A (printed) list of ggplot objects, each element being a plot for a situation

Note

The plots titles are given by their situation name.

SticsRPacks/CroPloteR documentation built on May 8, 2024, 5:20 a.m.