MeanSpeciesCategoryCatch: Mean species category catch over Stations in each AcousticPSU
In StoXProject/RstoxBase: Base StoX Functions

MeanSpeciesCategoryCatch

R Documentation

Mean species category catch over Stations in each AcousticPSU

Description

This function averages link{SpeciesCategoryCatchData} data horizontally, weighted by the effective towed distance.

Usage

MeanSpeciesCategoryCatch(
  SpeciesCategoryCatchData,
  SumSpeciesCategoryCatchData,
  LayerDefinition = c("FunctionParameter", "FunctionInput", "PreDefined"),
  LayerDefinitionMethod = c("WaterColumn", "HighestResolution", "Resolution", "Table"),
  Resolution = double(),
  LayerTable = data.table::data.table(),
  BioticLayer = NULL,
  SurveyDefinition = c("FunctionParameter", "FunctionInput"),
  SurveyDefinitionMethod = c("AllStrata", "Table"),
  SurveyTable = data.table::data.table(),
  Survey = NULL,
  PSUDefinition = c("FunctionParameter", "FunctionInput"),
  PSUDefinitionMethod = c("StationToPSU", "None"),
  StratumPolygon = NULL,
  BioticPSU = NULL
)

Arguments

`SpeciesCategoryCatchData`	The `SpeciesCategoryCatchData` data.
`SumSpeciesCategoryCatchData`	The `SumSpeciesCategoryCatchData` data.
`LayerDefinition`	The method to use for defining the Layers, one of `FunctionParameter` to define the Layers on the fly in this function, `FunctionInput` to import Layer process data from a previously run process using the function `DefineBioticLayer`, or `PreDefined` whihc requires `SumLengthDistributionData` as input.
`LayerDefinitionMethod`	See `DefineBioticLayer`
`Resolution`	Numeric: A single numeric giving the thickness of the layers.
`LayerTable`	A table of Layer name, MinLayerDepth in meters and MaxLayerDepth in meters, defining the Layers.
`BioticLayer`	The `BioticLayer` process data.
`SurveyDefinition`	The method to use for defining the Survey, one of `FunctionParameter` to define the Survey on the fly in this function, or `FunctionInput` to import Survey process data from a previously run process by the input `Survey`.
`SurveyDefinitionMethod`	See `DefineSurvey`
`SurveyTable`	A table of the two columns Stratum and Survey.
`Survey`	The `Survey` process data.
`PSUDefinition`	The method to use for defining the PSUs, one of `FunctionParameter` to define the PSUs on the fly in this function, or `FunctionInput` to import PSU process data from a previously run process by `BioticPSU`.
`PSUDefinitionMethod`	See `DefineBioticPSU`
`StratumPolygon`	The `StratumPolygon` process data.
`BioticPSU`	The `BioticPSU` process data.