| AcousticPSU | Add, remove and renamme acoustic PSUs and EDSUs |
| addProcess | Add a StoX process to a model. |
| BioticAssignment | Add or remove biotic hauls to/from assignment of hauls to... |
| BioticPSU | Add, remove and renamme biotic PSUs and Stations |
| Bootstrap | Bootstrap the baseline model, write to NetCDF4 file |
| BootstrapData | Bootstrap data |
| bootstrapRDataToNetCDF4 | Convert a bootstrap RData file to NetCDF4. THIS FUNCTION IS... |
| compareProjectToStoredOutputFiles | Function for comparing existing output files with the memory... |
| compareProjectToStoredOutputFilesAll | Function for comparing existing output files with the memory... |
| compareSweptAreaBaseline | Compare processes in a StoX 2.7 project and a copy in StoX >=... |
| convertKeys2.7To3 | Convert keys of a 2.7 table to mimic the keys of StoX >= 3 |
| convertStoX2.7To3 | Backward compabitibility actions: |
| DataTypes | StoX data types of the RstoxFramework package |
| duplicateProcess | Duplicate a StoX process. |
| estimateTimeOfProcesses | Get process progress |
| expandDT | Function to expand a data table so that the cells that are... |
| expandProcess | Insert a StoX process after a specific process |
| expression2list | Parse an R expression to a nested list: |
| extractErrorIDs | Get IDs of bad Hauls or Samples |
| extractPackageNameAsNames | Small function to parse the string defining officical... |
| findProcess | Find a processes from processName or functionName |
| fixedWidthTable | Function to convert data.table to fixed width: |
| general_arguments | General parameters of RstoxFramework. |
| getActiveProcess | Get the active process. |
| getAvaiableTemplates | Get avilable templates. |
| getAvailableStoxFunctionNames | Function returning the names of the StoX functions available... |
| getBootstrapOutputVariables | Get variables used in reports, specifically for use in the... |
| getModelData | Get output data from processes of an open StoX project |
| getOfficialRstoxPackageVersion | Get certified Rstox package versions |
| getOutputVariablesUsedInReport | List variables used in the reports of a project |
| getProcess | Get the properties of a StoX process |
| getProcessIDByOffset | Function to get process index from process ID |
| getProcessIDFromFunctionName | Get process ID from function name |
| getProcessIDFromProcessName | Function to get process ID from process name |
| getProcessIndexFromProcessID | Function to get process index from process ID |
| getProcessNameFromProcessID | Function to get process name from process ID |
| getProcessOutput | Get output of a StoX process. |
| getProcessOutputElements | Get the names of the output tables of a process |
| getProcessOutputFiles | Function to get all process output memory files of a process: |
| getProcessOutputFolder | Find the output folder of a process |
| getProcessOutputTableNames | Get the names of the output tables of a process |
| getProcessPlotOutput | Get output of a StoX process. |
| getProcessTable | Functions to get the process table of a model. |
| getProjectPaths | This function gets the paths defined by... |
| getRelevantClass | Function to get the first class of the object x, except if... |
| getResamplableProcesses | Utility function for processPropertyFormats. This is exported... |
| getResampleFunctions | Utility function for processPropertyFormats. This is exported... |
| getRstoxFrameworkDefinitions | Get RstoxFramework definitions |
| getSubPlotNames_PlotReportBootstrap | List PlotReportBootstrap plots |
| getTemplate | Get a template. |
| hasFileOutput | Does the process store output files?: |
| initiateRstoxFramework | Definitions stored in the RstoxFramework environment |
| json2expression | Function to convert from json to R expression: |
| KnownDifferencesOldVersusNewStoX | Known differences between StoX 2.7 and the new StoX >= 3.0.0 |
| list2expression | Function to convert from R list to R expression: |
| ModelData | Model data generated by RstoxFramework |
| modifyModel | Modify a model |
| modifyProcess | Modify a process |
| modifyProject | Modify a project |
| modifyProjects | Modify multiple projects |
| parseParameter | Function to parse a parameter coming from the GUI |
| PlotReportBootstrap | Plot ReportBootstrapData |
| PlotReportBootstrapData | Plot of reported Bootstrap data |
| prependProcess | Prepend (append before) to a process by adding another... |
| ProcessData | Process data used by RstoxFramework |
| processPropertyFormats | Process property formats for RstoxFramework |
| progressOfProcesses | Get process progress |
| Projects | Create, open, close, save, saveAs, copy and delete a StoX... |
| ProjectUtils | Utilities for projects. |
| purgeOutput | Delete the contents of the output folder of a model. |
| readBootstrapData | Get bootstrap data saved in a NetCDF4 file |
| readMemoryFile | Read a StoX memory file |
| readModelData | Read the output files of a project |
| readOfficialRstoxPackageVersionsFile | Get certified Rstox package versions |
| readProcessOutputFile | Function to read a single process output file, possibly by... |
| readStoX2.7OutputFile | Read output file from StoX 2.7 |
| rearrangeProcesses | Rearrange processes of a StoX model. |
| removeProcess | Remove a StoX process |
| removeProcesses | Remove a StoX process |
| ReportBootstrap | Report Bootstrap |
| ReportBootstrapData | Reported Bootstrap data |
| ResampleBioticAssignmentByAcousticPSU | Resamples biotic PSUs |
| ResampleBioticAssignmentByStratum | Resamples biotic PSUs |
| ResampleMeanLengthDistributionData | Resamples biotic PSUs within Stratum in... |
| ResampleMeanNASCData | Resamples acoustic PSUs |
| ResampleMeanSpeciesCategoryCatchData | Resamples biotic PSUs within Stratum in... |
| ResamplePreySpeciesCategoryCatchDataHierarchical | Resamples biotic PSUs within Stratum in... |
| ResamplePreySpeciesCategoryCatchDataHierarchicalNotUsingmakeUniqueVars | Resamples biotic PSUs within Stratum in... |
| ResamplePreySpeciesCategoryCatchDataHierarchicalUsingScaling | Resamples biotic PSUs within Stratum in... |
| resetModel | Reset a StoX model. |
| RstoxFramework | The Engine of StoX |
| RstoxPackageStatus | Get package status of an Rstox package |
| runFunction | General functions to run a function of an Rstox package,... |
| runModel | Run a model of a StoX project |
| runProcess | Run one process |
| runProcesses | Run processes of a model. |
| runProject | Run all models of a StoX project |
| runProject_ReplaceAcousticFiles | Add a process DefineAcousticPSU with DefinitionMethod... |
| runProjects | Run all models of a StoX project |
| stopProcesses | Stop runProcesses(). |
| stoxFunctionAttributes | A list of the attributes of the exported StoX functions: |
| StoXGUI_interfaces | Get objects for use in the GUI |
| Stratum | Stratum manipulation |
| subsetByAllEqual | Remove columns where all values are equal both in the x and y... |
| unlistToDataType | Function to flatten a list of output data and add names from... |
| unReDoProject | Function to undo or redo, i.e., reset the current project... |
| unzipProject | Function for unzipping a zipped StoX project |
| writeActiveProcessID | This function has the primary use of writing the proided... |
| write_list_as_tables_NetCDFF4 | Write/append a table/list of tables to NetCDF4 |
| writeProjectDescription | Write the project description. |
| writeProjectDescriptionJSON | Write project description to a file in json format |
| writeStoxJsonSchema | Export StoX JSON schema |
