R/hammer-data.R

In StoreyLab/biobroom: Turn Bioconductor objects into tidy data frames

#' @title ExpressionSet results from Hammer et al 2010
#'
#' @docType data
#'
#' @description An ExpressionSet containing the results of the Hammer et al
#' 2010 RNA-Seq study on the nervous system of rats (Hammer et al 2010).
#'
#' This was downloaded from the ReCount database of analysis-ready RNA-Seq
#' datasets (Frazee et al 2011).
#'
#' Hammer, P., Banck, M. S., Amberg, R., Wang, C., Petznick, G., Luo, S.,
#' Khrebtukova, I., Schroth, G. P., Beyerlein, P., and Beutler, A. S. (2010).
#' mRNA-seq with agnostic splice site discovery for nervous system
#' transcriptomics tested in chronic pain. Genome research, 20(6), 847-860.
#' http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877581/
#'
#' Frazee, A. C., Langmead, B., and Leek, J. T. (2011). ReCount: a
#' multi-experiment resource of analysis-ready RNA-seq gene count datasets.
#' BMC Bioinformatics, 12, 449. http://bowtie-bio.sourceforge.net/recount/
#'
#' @importFrom Biobase ExpressionSet exprs
#' @return ExpressionSet
"hammer"