| plot | Graphical Display of Trigger Analysis |
| trigger-build | Format the input data and create an Trigger object |
| trigger-class | A class to store and analyze data for Transcriptional... |
| trigger-eigenR2 | Estimate the proportion of genome-wide variation explained by... |
| trigger-export2cross | Export Trigger data to R/qtl's cross class object |
| trigger-link | Genomewide eQTL analysis |
| trigger-loclink | Estimate local-linkage probability for each gene |
| trigger-mlink | Multi-Locus Linkage (Epistasis) Analysis |
| trigger-net | Network-Trigger analysis |
| trigger-netPlot2ps | Write the network from a trigger probability matrix to a... |
| trigger-trait | Trait-trigger analysis |
| yeast | A yeast data set for Transcriptional Regulation Inference... |
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