Description Usage Arguments Author(s) See Also Examples
Graphical display of genomewide linkage map, multi-locus linkage or eQTL variation
1 2 3 |
x |
An object of class |
y |
Ignore option, not used. |
type |
An argument describing the type of plot. Select from |
cutoff |
Threshold value for |
qcut |
Q-value threshold for |
bin.size |
Optional for |
Lin S. Chen lschen.stat@gmail.com, Dipen P. Sangurdekar dps@genomics.princeton.edu and John D. Storey jstorey@princeton.edu
trigger.link
, trigger.mlink
and trigger.eigenR2
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | ## Not run:
data(yeast)
attach(yeast)
triggerobj <- trigger.build(marker=marker, exp=exp,
marker.pos=marker.pos, exp.pos=exp.pos)
triggerobj <- trigger.link(triggerobj, gender=NULL, norm=TRUE)
plot(triggerobj,type = "link", cutoff=1e-5)
triggerobj <- trigger.eigenR2(triggerobj, adjust=FALSE)
plot(triggerobj, type = "eigenR2")
triggerobj<- trigger.mlink(triggerobj, B=5, seed=123)
plot(triggerobj, qcut=0.1, bin.size=NULL)
detach(yeast)
## End(Not run)
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