PhosphoSite.mouse: PhosphoSitePlus annotations for mouse (updated 2019)
In SydneyBioX/phosphoR: A set of methods and tools for comprehensive analysis of phosphoproteomics data
Description
The data object contains the annotations of kinases and their conrresponding substrates as phosphorylation sites in mouse. It is extracted
from the PhosphoSitePlus database. For details of PhosphoSitePlus, please refer to the article: Hornbeck et al. Nucleic Acids Res., 40:D261-70, 2012.
The data object also contains additional manually curated kinase substrate lists. This includes ‘Humphrey.xxx’ which are lists currated from Humphrey et al. (2013), Cell Metabolism, <doi:10.1016/j.cmet.2013.04.010>; and ‘Yang.xxx’ which are lists currated from Yang et al. (2019), Cell Systems, <doi:10.1016/j.cels.2019.03.012>.
SydneyBioX/phosphoR documentation built on May 20, 2019, 12:58 a.m.
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Description
The data object contains the annotations of kinases and their conrresponding substrates as phosphorylation sites in mouse. It is extracted from the PhosphoSitePlus database. For details of PhosphoSitePlus, please refer to the article: Hornbeck et al. Nucleic Acids Res., 40:D261-70, 2012.
The data object also contains additional manually curated kinase substrate lists. This includes ‘Humphrey.xxx’ which are lists currated from Humphrey et al. (2013), Cell Metabolism, <doi:10.1016/j.cmet.2013.04.010>; and ‘Yang.xxx’ which are lists currated from Yang et al. (2019), Cell Systems, <doi:10.1016/j.cels.2019.03.012>.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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