scSEGIndex: scSEGIndex

Description Usage Arguments Value Author(s)

View source: R/scSEGIndex.R

Description

Calculate single-cell Stably Expressed Gene (scSEG) index

Usage

1
scSEGIndex(exprsMat, cell_type = NULL, ncore = 1)

Arguments

exprsMat

The log-transoformed single-cell data (assumed to be no batch effect and covered a wide range of cell types). A n by m matrix, where n is the number of genes and m is the number of cells

cell_type

A vector indicating the cell type information for each cell in the gene expression matrix. If it is NULL, the function calculates the scSEG index without using F-statistics.

ncore

Number of cores that are used in parallel

Value

A matrix of stably expressed features.

Author(s)

Shila Ghazanfar, Yingxin Lin, Pengyi Yang


SydneyBioX/scMerge documentation built on Oct. 9, 2018, 3:28 p.m.