API for SydneyBioX/scMerge
scMerge: Merging multiple batches of scRNA-seq data
| Global functions | |
|---|---|
| .check_input_scMerge2 | Source code |
| .check_input_scMerge2h | Source code |
| aggregate.Matrix | Source code |
| aic | Source code |
| bic | Source code |
| calculateSil | Source code |
| centroidDist | Source code |
| check_input | Source code |
| computePCA_byHVGMarker | Source code |
| compute_cluster_res | Source code |
| compute_data_para | Source code |
| compute_dist_mat | Source code |
| compute_dist_res | Source code |
| construct_pseudoBulk | Source code |
| createChunk | Source code |
| create_pseudoBulk | Source code |
| create_pseudoBulk_divide | Source code |
| create_pseudoBulk_pool_divide | Source code |
| example_sce | Man page |
| f_measure | Source code |
| fastRUVIII | Man page Source code |
| feature_selection | Source code |
| findHVG | Source code |
| findMNC | Source code |
| gammaNormMix | Source code |
| getAdjustedMat | Man page Source code |
| group_wtihin_batch | Source code |
| hvg_cases | Source code |
| icl_bic | Source code |
| identifyCluster | Source code |
| kBET_batch_sil | Source code |
| make_para_gn_parallel | Source code |
| mncReplicate | Source code |
| my_residop | Source code |
| pseudoRUVIII | Source code |
| ruvSimulate | Man page Source code |
| scMerge | Man page Source code |
| scMerge2 | Man page Source code |
| scMerge2h | Man page Source code |
| scRUVIII | Man page Source code |
| scRUVg | Man page Source code |
| scReplicate | Man page Source code |
| scSEGIndex | Man page Source code |
| sce_cbind | Man page Source code |
| segList | Man page |
| segList_ensemblGeneID | Man page |
| solve_axb | Source code |
| standardize2 | Source code |
| supervisedReplicate | Source code |
| tological | Source code |
| wvReplicate | Source code |
| zeroOneScale | Source code |
