getSBMLerrors: Get SBML Errors

In SysBioChalmers/sybil-SBML: 'SBML' Integration in Package 'Sybil'

Get SBML Errors

Description

Retrieve list of errors in a SBML file.

Usage

  getSBMLerrors(sbmlf)

Arguments

sbmlf

An object of class sbmlPtr as returned by openSBMLfile. This is basically a pointer to a SBML document.

Value

If the SBML document contains errors, a list is returned:

infos	a list of infos.
warnings	a list of warnings.
errors	a list of errors.
fatals	a list of fatals.

Each elements of the lists above, is again a list:

id

A single integer value containing the error id.

line

A single integer value containing the row number of the SBML file producing the error.

column

A single integer value containing the column number of the SBML file producing the error.

message

A single character string containing the error message.

If the SBML document does not contain errors, TRUE is returned.

Author(s)

Gabriel Gelius-Dietrich <[e-mail]>

Maintainer: Mayo Roettger <[e-mail]>

References

Bornstein, B. J., Keating, S. M., Jouraku, A., and Hucka M. (2008) LibSBML: An API Library for SBML. Bioinformatics 24, 880–881.

See Also

openSBMLfile, validateSBMLdocument, sbmlPtr

SysBioChalmers/sybil-SBML documentation built on Aug. 24, 2023, 1:11 p.m.