sbmlError-class: Class '"sbmlError"'
In SysBioChalmers/sybil-SBML: 'SBML' Integration in Package 'Sybil'

sbmlError-class

R Documentation

Class `"sbmlError"`

Description

Class to administrate Infos, Warnings, Errors and Fatals returned after validation of an SBML file.

Objects from the Class

Objects can be created by calls of the form

err <- sbmlError(err, sbmlf).

err:: an object of class sbml_error containing a list of SBML errors.
sbmlf:: an object of class sbmlPtr containing a pointer to an SBML document object.

This constructor function is only used internally, objects of class sbmlError are returned by the functions validateSBMLdocument and getSBMLerrors.

Slots

sbmlInfos:: Object of class "list" containing all Infos.
sbmlWarnings:: Object of class "list" containing all Warnings.
sbmlErrors:: Object of class "list" containing all Errors.
sbmlFatals:: Object of class "list" containing all Fatals.
sbmlFileName:: Object of class "character" containing the file name of the SBML file generating the errors.
sbmlDocKey:: Object of class "character" containing a single character string functioning as a unique key to a SBML document object.

Methods

getNumErrors: signature(object = "sbmlError"): returns a vector of length 5 containing the number of Infos, Warnings, Errors, Fatals and the total number of entries.
length: signature(x = "sbmlError"): returns the total number of entries.
printSlot: signature(object = "sbmlError", ws = "character"): prints the slot given in argument ws. It can be "Infos", "Warnings", "Errors" or "Fatals".
sbmlDocKey: signature(object = "sbmlError"): gets the sbmlDocKey slot.
sbmlErrors: signature(object = "sbmlError"): gets the sbmlErrors slot.
sbmlFatals: signature(object = "sbmlError"): gets the sbmlFatals slot.
sbmlFileName: signature(object = "sbmlError"): gets the sbmlFileName slot.
sbmlInfos: signature(object = "sbmlError"): gets the sbmlInfos slot.
sbmlWarnings: signature(object = "sbmlError"): gets the sbmlWarnings slot.