API for T-Heide/MLLLP
Maximum Likelihood Assignment of Low-Pass Samples to Trees
| Global functions | |
|---|---|
| %>% | Man page |
| add_lowpass_sampled | Man page Source code |
| calc_expected_vaf_density | Source code |
| calc_post_lik_data | Source code |
| construct_deep_tree | Source code |
| example_lp_data | Man page |
| get_id_mutated_before_edge | Source code |
| get_mutation_ids_per_edge | Man page Source code |
| get_phydat_from_genotyping | Source code |
| load_genotyping_file | Man page Source code |
| parse_data_files | Source code |
| phydat_to_tree | Source code |
| plot_lp_loglik | Man page Source code |
| plot_lp_loglik_edge | Man page Source code |
| plot_lp_position_edge | Man page |
| plot_post_lik_data | Source code |
| plot_sample_data | Man page |
| plot_tree | Man page |
| plot_tree_and_cn_data | Man page |
| plot_vaf_post_lik_data | Source code |
| reexports | Man page |
| remove_clonal_variants_tree | Source code |
| remove_root_tip | Man page |
| set_lp_tiplength | Man page |
