plot_tree_and_cn_data: Plot showing tree and CNA data site-by-site.

In T-Heide/MLLLP: Maximum Likelihood Assignment of Low-Pass Samples to Trees

Description

Plot showing tree and CNA data site-by-site.

Usage

plot_tree_and_cn_data(
  x,
  cn_data,
  title = "",
  dropped_samples = NULL,
  plot_tree_function = NULL,
  labeller_function = function(x) x,
  ...
)

Arguments

x	Object returned from 'add_lowpass_sampled' or a object of type 'phylo'.
cn_data	CNA data as a named list of genomic ranges objects with a 'cn' metadata column.
title	(optional) title for the plot.
dropped_samples	(optional) vector of dropped samples.
plot_tree_function	(optional) function to plot the tree object.
labeller_function	(optional) function returning a modified version of sample labels.
...	(optional) arguments passed to the 'plot_tree_function' function.

Value

A grob.

T-Heide/MLLLP documentation built on Dec. 18, 2021, 3:09 p.m.