plot_tree: A internal function used for the plotting of trees

In T-Heide/MLLLP: Maximum Likelihood Assignment of Low-Pass Samples to Trees

Description

A internal function used for the plotting of trees

Usage

plot_tree(
  tree,
  HI = NULL,
  color_by = NULL,
  linewidth = 1,
  pointsize = 1,
  textsize = 2.5,
  labeller_function = NULL,
  keep_conf_label = FALSE,
  subset = NULL
)

Arguments

tree	object of class phylo to plot.
HI	(optional) HI of the tree (unused).
color_by	(optional) lookup table with color labels (NULL).
linewidth	(optional) numeric value defining linewidth of tree edges (1).
pointsize	(optional) numeric value defining point size of tree tips (1).
textsize	(optional) numeric value defining linewidth of tree edges (2.5).
labeller_function	(optional) HI of the tree (unused).
keep_conf_label	(optional) Flat indicating if ‘confidence label’ should be keeped (default: FALSE).
subset	(optional) character vector defining a subset of samples to plot.

Value

ggplot object

Examples

plot_tree(ape::rtree(5))

T-Heide/MLLLP documentation built on Dec. 18, 2021, 3:09 p.m.