Session2Df: Session 2 Df

In THJlab/seqNdisplayR: A Tool for Customizable and Reproducible Plotting of Sequencing Coverage Data

Session 2 Df

Description

Converts session information to data frame as in Excel import sheet.

Usage

Session2Df(
  .samples,
  .colors,
  .bigwigs,
  .bigwig_dirs,
  .parameters,
  strand_regex = c(`+` = "plus", `-` = "minus"),
  factorize = FALSE,
  level = 0
)

Arguments

.samples	samples object as used by seqNdisplayR
.colors	colors object as used by seqNdisplayR
.bigwigs	bigwigs object as used by seqNdisplayR
.bigwig_dirs	bigwig_dirs as used in seqNdisplayR
.parameters	list of parameters as used in seqNdisplayR
strand_regex	named vector c('+': ..., '-': ...) for regex for converting plus strand to minus strand bigwig names
factorize	TRUE/FALSE. Default: FALSE
level	do not change, required internally during recursion, defaults=0.

Details

Converts session information to dataframe as specified in Excel import sheet but using all-filled mode. Batch information is obtained from parameters.

Value

A dataframe with columns: color, bigwig_directory, bigwig_file, strand, batch, dataset and optionally subgroup_1, subgroup_2, ...

Author(s)

MS

THJlab/seqNdisplayR documentation built on Aug. 3, 2024, 6:56 p.m.