nii.qc.snr: Regional Signal-to-Noise Ratio

Description Usage Arguments Value Author(s)

View source: R/nii.qc.snr.R

Description

Calculate the signal to noise ratio within the masked region.

SNR = μ_ROI/[σ_ROI√(n/(n-1))]

Usage

1
nii.qc.snr(img.nii, img.vol=1L, mask.nii, mask.vol=1L, mask.dir="gt", mask.thresh=0)

Arguments

img.nii

Full directory listing to desired nifti image (unzipped)

img.vol=1L

For multi volume images; an integer indicating the volume to load (1..N)

mask.nii

Full directory listing to desired nifti image to use for masking (unzipped). Must be identical pixel dimensions to base image.

mask.vol=1L

For multi volume images; an integer indicating the volume to load (1..N)

mask.dir="gt"

Direction to threshold the mask image to generate the desired ROI. Options include ("gt") [>] Default, "ge" [>=], "lt" [<], "le" [<=], "eq" [==]

mask.thresh=0

Value at which to threshold the mask image to generate an ROI. E.g., for binary masks, where the value 1 indicates the ROI, default of >0, will generate the appropriate mask

Value

a numeric value indicating signal-to-noise-ratio

Author(s)

Timothy R. Koscik <timkoscik+niiqc@gmail.com>


TKoscik/nifti.qc documentation built on May 6, 2019, 4:30 p.m.