plot_dissimilarity_matrix: A heatmap plot of the dissimilarity matrix of two multiple...

Description Usage Arguments Note Examples

View source: R/Plots.R

Description

A heatmap plot of the dissimilarity matrix of two multiple sequence alignments

Usage

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Arguments

x

an object of type "pairwise alignment comparison" (typically the summary file generated by compare_alignments)

display

display this plot (default = TRUE)

Note

This function displays the dissimilarity categories for all characters in the reference alignment. This gives a representation of which columns are well agreed upon by the MSAs, and which sequence regions of the reference alignment are split, merged, or shifted.

Examples

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TS404/AlignStat documentation built on Oct. 13, 2021, 4:13 p.m.