Files in Tabima/effectR
Predicts Oomycete Effectors
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/datasets.R
R/effector.summary.R
R/hmm.logo.R
R/hmm.search.R
R/internal.R
R/package.R
R/regex.search.R
R/shiny.effectR.R
README.md
cran-comments.md
data/candidate_rxlr.RData
effectR.Rcheck/00_pkg_src/effectR/DESCRIPTION
effectR.Rcheck/00_pkg_src/effectR/NAMESPACE
effectR.Rcheck/00_pkg_src/effectR/NEWS.md
effectR.Rcheck/00_pkg_src/effectR/R/datasets.R
effectR.Rcheck/00_pkg_src/effectR/R/effector.summary.R
effectR.Rcheck/00_pkg_src/effectR/R/hmm.logo.R
effectR.Rcheck/00_pkg_src/effectR/R/hmm.search.R
effectR.Rcheck/00_pkg_src/effectR/R/internal.R
effectR.Rcheck/00_pkg_src/effectR/R/package.R
effectR.Rcheck/00_pkg_src/effectR/R/regex.search.R
effectR.Rcheck/00_pkg_src/effectR/R/shiny.effectR.R
effectR.Rcheck/00_pkg_src/effectR/README.md
effectR.Rcheck/00_pkg_src/effectR/build/vignette.rds
effectR.Rcheck/00_pkg_src/effectR/data/candidate_rxlr.RData
effectR.Rcheck/00_pkg_src/effectR/inst/doc/effectR.R
effectR.Rcheck/00_pkg_src/effectR/inst/doc/effectR.Rmd
effectR.Rcheck/00_pkg_src/effectR/inst/doc/effectR.html
effectR.Rcheck/00_pkg_src/effectR/inst/extdata/Alin_infestans.fasta
effectR.Rcheck/00_pkg_src/effectR/inst/extdata/REGEX.fasta
effectR.Rcheck/00_pkg_src/effectR/inst/extdata/test_infestans.fasta
effectR.Rcheck/00_pkg_src/effectR/inst/shiny/Examples/test_infestans.fasta
effectR.Rcheck/00_pkg_src/effectR/inst/shiny/Files/AA.fasta
effectR.Rcheck/00_pkg_src/effectR/inst/shiny/server.R
effectR.Rcheck/00_pkg_src/effectR/inst/shiny/ui.R
effectR.Rcheck/00_pkg_src/effectR/man/candidate.rxlr.Rd
effectR.Rcheck/00_pkg_src/effectR/man/effectR.Rd
effectR.Rcheck/00_pkg_src/effectR/man/effector.summary.Rd
effectR.Rcheck/00_pkg_src/effectR/man/fasta_to_stockholm.Rd
effectR.Rcheck/00_pkg_src/effectR/man/get_hmmer_path.Rd
effectR.Rcheck/00_pkg_src/effectR/man/get_mafft_path.Rd
effectR.Rcheck/00_pkg_src/effectR/man/hmm.logo.Rd
effectR.Rcheck/00_pkg_src/effectR/man/hmm.search.Rd
effectR.Rcheck/00_pkg_src/effectR/man/regex.search.Rd
effectR.Rcheck/00_pkg_src/effectR/man/shiny.effectR.Rd
effectR.Rcheck/00_pkg_src/effectR/tests/testthat.R
effectR.Rcheck/00_pkg_src/effectR/tests/testthat/test_HMM.R
effectR.Rcheck/00_pkg_src/effectR/tests/testthat/test_HMM_logo.R
effectR.Rcheck/00_pkg_src/effectR/tests/testthat/test_effector_summary.R
effectR.Rcheck/00_pkg_src/effectR/tests/testthat/test_regex.R
effectR.Rcheck/00_pkg_src/effectR/vignettes/effectR.Rmd
effectR.Rcheck/00check.log
effectR.Rcheck/R_check_bin/R
effectR.Rcheck/R_check_bin/Rscript
effectR.Rproj
inst/extdata/Alin_infestans.fasta
inst/extdata/REGEX.fasta
inst/extdata/test_infestans.fasta
inst/shiny/Examples/test_infestans.fasta
inst/shiny/Files/AA.fasta
inst/shiny/Shiny_Pipeline.Rproj
inst/shiny/server.R
inst/shiny/ui.R
man/.Rapp.history
man/candidate.rxlr.Rd
man/effectR.Rd
man/effector.summary.Rd
man/fasta_to_stockholm.Rd
man/get_hmmer_path.Rd
man/get_mafft_path.Rd
man/hmm.logo.Rd
man/hmm.search.Rd
man/regex.search.Rd
man/shiny.effectR.Rd
tests/testthat.R
tests/testthat/test_HMM.R
tests/testthat/test_HMM_logo.R
tests/testthat/test_effector_summary.R
tests/testthat/test_regex.R
vignettes/effectR.Rmd
