Description Usage Arguments Details
This function will launch an interactive web interface to run the effectR package functions to obtain effectors. It runs using the shiny R package.
1 | shiny.effectR(mafft.path = NULL, hmm.path = NULL)
|
mafft.path |
Local path of folder containing the MAFFT binary executable file or the executable file itself. If not specified, then MAFFT must be in the program search path. |
hmm.path |
Local path of folder containing the HMMER binaries. If not specified, then HMMER executables must be in the program search path. |
To successfully run this function the user will need to set the
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