extract_results: Extract results for executive summary

In TalhoukLab/biostatUtil: Utility Functions Used in Biostatistics Projects

Extract results for executive summary

Description

Extract statistical test results for Executive Summary section at beginning of an RSF.

Usage

extract_km(data, var, outcome, args, digits = 3)

extract_cox(x, var, outcome)

Arguments

data	data frame with clinical variables and outcomes
var	variable name
outcome	survival outcome. One of "os", "dss", "pfs".
args	list of arguments for survival analyses
digits	number of digits to round p-value
x	an object from result of doCoxphGeneric() or doCoxphMultivariable()

Details

• extract_km() extracts the Kaplan-Meier Log Rank test p-value for a specified variable

• extract_cox() extracts Cox proportional hazards model hazard ratios with confidence intervals and LRT p-values for a specified variable

Value

Extracted result that can be used in the form of inline text as part of the Executive Summary.

Author(s)

Derek Chiu

TalhoukLab/biostatUtil documentation built on April 14, 2025, 4:15 a.m.