Files in TaoDFang/GENEMABR
Gene-set Enrichment with Regularized Regression
.Rbuildignore
.gitignore
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/data.R
R/regression_selected_pathways_funcs.R
R/supplementary_functions.R
README.md
data/fetFdrVerification.RData
data/gene_pathway_matrix.RData
data/human_go_ontology.RData
data/human_go_roots.RData
data/human_go_sub_roots.RData
data/human_reactome_ontology.RData
data/human_reactome_roots.RData
data/modelProbSimulation.RData
data/modelVerification.RData
data/simGenesets.RData
inst/data_raw/Daniel_S5_mod283.txt
inst/data_raw/Daniel_S5_mod283.xlsx
inst/figures/figureS5module283.png
man/find_root_ids.Rd
man/fisherVerif.Rd
man/fisher_exact_test.Rd
man/from_id2name.Rd
man/fullProbSimResDf.Rd
man/gene_pathway_matrix.Rd
man/get_steps.Rd
man/human_go_ontology.Rd
man/human_go_roots.Rd
man/human_go_sub_roots.Rd
man/human_reactome_ontology.Rd
man/human_reactome_roots.Rd
man/mydata.Rd
man/pretrained_gaussian_lambda.Rd
man/regression_selected_pathways.Rd
man/simGenesets.Rd
man/verifKeyRes.Rd
tests/testthat.R
tests/testthat/test-regression_selected_pathways_function.R
tests/testthat/test-supplementary_functions.R
vignettes/gerr-binomial-gaussian.Rmd
vignettes/gerr-simulation.Rmd
vignettes/gerr.Rmd
vignettes/logistic-linear-regression.bib
