from_id2name: from_id2name

Description Usage Arguments Value Examples

View source: R/supplementary_functions.R

Description

If you use the default pathway databases(GO Ontologyand REACTOME),this function can help you to get pathways names from pathways IDs. If not found, the gene-set name is used.

Usage

1
from_id2name(selected_pathways)

Arguments

selected_pathways

A list of GO and/or REACTOME pathways IDs. Each elmment is this list can be a single id or multi-ids seperated "#"

Value

A list of GO sub-root or REACTOME root names for provided pathways.

Examples

1
from_id2name((selected_pathways=list(c("GO:0032991#GO:0044425#GO:0044464"),"R-HSA-5357801")))

TaoDFang/GENEMABR documentation built on July 28, 2019, 3:16 p.m.