TapscottLab/SeqPipelineTools: Pipeline tools for RNA-seq or ChIP-seq data

This package provides tools supporting RNA-seq, ChIP-seq data and variant analysis as well as variant. Tools includes wrappers for trimming low quality tails, identifying mismatch types, making summarizedExpriment objects with gene counts, DESeq2 analysis and reports with annotation.

Getting started

Package details

AuthorChao-Jen Wong
Bioconductor views RNASeq software
MaintainerChao-Jen Wong <[email protected]>
LicenseArtistics-2.0
Version0.99.3
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("TapscottLab/SeqPipelineTools")
TapscottLab/SeqPipelineTools documentation built on Feb. 14, 2018, 12:11 a.m.