API for TapscottLab/SeqPipelineTools
Pipeline tools for RNA-seq or ChIP-seq data

Global functions
SeqPipelineTools Man page
SeqPipelineTools-package Man page
addColToDF Source code
aroundSummit Source code
catchMismatch Man page Source code
dfToGr Source code
filterByMAPQ Source code Source code
filter_peaks Source code
freqAIMismatch Source code
getBestHit Source code
getMACSPeaksAnno Man page Source code
getScaledCountsPerTx Man page Source code
getTally Source code
getTally.advance Source code
makePCAPlotByPhenoType Source code
makePeaksSeq Source code
makeSEwrapper Man page Source code
olRMSK Source code
preprocessFastq Source code
rpkm Source code
simpleDESeqReport Man page Source code
simpleDESeqReport.EnsDb Source code
simpleFilterFastq Source code
simpleLog10Scatter Source code
tallyWrapper Man page Source code
trimLowQualBase Man page Source code
useSubread Source code
TapscottLab/SeqPipelineTools documentation built on Feb. 14, 2018, 12:11 a.m.