API for Thaliehln/timci
Data management and visualisation for the TIMCI project

Global functions
allocate_screening_facility Man page Source code
allocate_screening_facility2 Man page Source code
anonymise_dataframe Man page Source code
calculate_antibio_has_been_prescribed Man page Source code
calculate_antibio_has_been_recorded Man page Source code
calendar_heatmap Man page Source code
check_name_consistency Man page Source code
clean_followup_for_rate_estimation Man page Source code
combine_columns Man page Source code
combine_dataframes Man page Source code
concatenate_names Man page Source code
convert_age2ctg Man page Source code
convert_yi_age2ctg Man page Source code
correct_day0_all Man page Source code
correct_day0_drug_data Man page Source code
correct_day0_inconsistent_facilities Man page Source code
correct_day0_non_valid_facilities Man page Source code
correct_day28_all Man page Source code
correct_day28_duplicates Man page Source code
correct_day7_all Man page Source code
correct_day7_duplicates Man page Source code
correct_device_ids Man page Source code
correct_hospit_ids Man page Source code
correct_repeat_ids Man page Source code
correct_spa_sco_all Man page Source code
correct_spa_sco_fids Man page Source code
correct_spa_sco_hcp_ids Man page Source code
correct_spo2_values Man page Source code
correct_tf_inconsistent_facilities Man page Source code
count_baseline_vs_repeat Man page Source code
count_noneligibility Man page Source code
count_screening Man page Source code
count_submissions Man page Source code
create_day0_qc_flowchart Man page Source code
create_day28fu_outcome_qc_flowchart Man page Source code
create_day28fu_qc_flowchart Man page Source code
create_day7fu_outcome_qc_flowchart Man page Source code
create_day7fu_qc_flowchart Man page Source code
create_drug_qc_flowchart Man page Source code
create_hospit_qc_flowchart Man page Source code
create_odkc_draft_form Man page Source code
create_repeat_qc_flowchart Man page Source code
create_screening_qc_flowchart Man page Source code
create_withdrawal_qc_flowchart Man page Source code
csv_download_server Man page Source code
csv_download_ui Man page Source code
data_table_server Man page Source code
data_table_ui Man page Source code
dataset_export Man page Source code
deidentify_data Man page Source code
deidentify_spa_data Man page Source code
deidentify_spa_rx_data Man page Source code
delete_day0_records Man page Source code
delete_repeat_records Man page Source code
detect_blank_value Man page Source code
detect_drug Man page Source code
detect_id_duplicates Man page Source code
detect_inconsistent_dates Man page Source code
detect_inconsistent_names_between_visits Man page
detect_missing_clinical_presentation Man page Source code
detect_missing_diagnosis Man page Source code
detect_missing_referral Man page Source code
detect_missing_treatment Man page Source code
detect_missing_value Man page Source code
detect_name_duplicates Man page Source code
detect_namedob_duplicates Man page Source code
detect_negative_value Man page Source code
detect_non_timely_completion Man page Source code
detect_non_timely_submission Man page Source code
detect_participant_duplicates Man page Source code
display_weekly_fa_data_per_facility Man page Source code
edit_day0_child_ids Man page Source code
edit_day0_child_ids_spa_sco Man page Source code
edit_day0_to_repeat Man page Source code
export_cost_studies Man page Source code
export_df2csv Man page Source code
export_df2csvxlsx Man page Source code
export_df2rds Man page Source code
export_df2sqlite Man page Source code
export_df2xlsx Man page Source code
extract_additional_data_from_odk_zip Man page Source code
extract_all_visits Man page Source code
extract_baseline_visits Man page Source code
extract_complex_data_from_odk_server Man page Source code
extract_daily_facility_for_deviceid Man page Source code
extract_data_from_odk_server Man page Source code
extract_data_from_odk_zip Man page Source code
extract_enrolled_participants Man page Source code
extract_hypoxaemia Man page Source code
extract_last_fa_data Man page Source code
extract_main_facility_for_deviceid Man page Source code
extract_noneligible Man page Source code
extract_pii Man page Source code
extract_referrals Man page Source code
extract_repeat_visits Man page Source code
extract_screening_data Man page Source code
extract_tf_data Man page Source code
find_best_matched_names_between_fu_and_day0 Man page
find_closest_facility Man page Source code
format_day28_data Man page Source code
format_day7_data Man page Source code
format_hospital_data Man page Source code
format_multiselect_asws Man page Source code
format_nrow Man page Source code
format_odk_metadata Man page Source code
format_summary_table Man page Source code
format_text_fields Man page Source code
format_weekly_fa_data_for_export Man page Source code
formats2h1 Man page Source code
formats2h2 Man page Source code
formats2h3 Man page Source code
generate_calendar_heatmap Man page Source code
generate_calendar_heatmap2 Man page Source code
generate_cg_log Man page Source code
generate_day_bar_plot Man page Source code
generate_day_cumbar_plot Man page Source code
generate_enrolment_hist Man page Source code
generate_folder_structure Man page Source code
generate_fu_log Man page Source code
generate_fu_log_csv Man page Source code
generate_fu_logs Man page Source code
generate_hospital_log Man page Source code
generate_ltfu_log Man page Source code
generate_pdf_report Man page Source code
generate_physical_fu_log_csv Man page Source code
generate_pie_chart Man page Source code
generate_research_cdsa_report Man page Source code
generate_time_hist_plot Man page Source code
generate_week_bar_plot Man page Source code
generate_week_bar_plot2 Man page Source code
generate_word_report Man page Source code
get_summary_by_deviceid Man page Source code
get_summary_by_fid Man page Source code
heatmap_wday_hourofday Man page Source code
identify_day0_duplicates Man page Source code
identify_day0_duplicates_and_fu Man page Source code
identify_duplicates_by_dates Man page Source code
identify_duplicates_with_names Man page Source code
identify_ids_outside_lock_range Man page Source code
identify_multiple_enrolments Man page
identify_nonvalid_ids Man page Source code
identify_nonvalid_ids2 Man page Source code
identify_nonvalid_ids_flagged Man page Source code
identify_nonvalid_ids_with_matched_names Man page Source code
identify_repeat_duplicate Man page Source code
identify_true_duplicate Man page
import_col_specifications Man page Source code
import_country_specific_xls_dict Man page Source code
is_not_empty Man page Source code
load_qual_data Man page Source code
load_qual_data_and_generate_report Man page Source code
load_rctls_data Man page Source code
load_spapmtf_data Man page Source code
match_from_day0_xls_dict Man page Source code
match_from_dict Man page Source code
match_from_drug_xls_dict Man page Source code
match_from_filtered_xls_dict Man page Source code
match_from_tf_xls_dict Man page Source code
match_from_xls_dict Man page Source code
normalised_levenshtein_ratio Man page Source code
odk_data_info_server Man page Source code
odk_data_info_ui Man page Source code
pie_chart_server Man page Source code
pie_chart_ui Man page Source code
pivot_duplicates_to_columns Man page Source code
plot_gauge Man page Source code
plot_geom_bar_by_facility_over_time Man page Source code
plot_geom_bar_over_time Man page Source code
plot_numeric_indicator Man page Source code
plot_scatter_by_facility_over_time Man page Source code
process_facility_data Man page Source code
process_gps_coordinates Man page Source code
process_spa_hcpi_data Man page Source code
process_spa_sco_data Man page Source code
process_tanzania_facility_data Man page Source code
process_weekly_fa_data Man page Source code
publish_odkc_draft_form Man page Source code
quality_check_export Man page Source code
reactive_csv_download_server Man page Source code
reactive_data_table_server Man page Source code
reactive_odk_data_info_server Man page Source code
reactive_xlsx_download_server Man page Source code
read_day0_xls_dict Man page Source code
read_tf_xls_dict Man page Source code
remove_facilities_for_other_studies Man page Source code
report_download_server Man page Source code
report_download_ui Man page Source code
run_app Man page Source code
run_mini_app Man page Source code
run_rmarkdown_rctls Man page Source code
run_rmarkdown_reportonly Man page Source code
select_list_item_server Man page Source code
select_list_item_ui Man page Source code
selective_multi_replace Man page Source code
selective_replace Man page Source code
send_email Man page Source code
send_email_tls Man page Source code
send_weekly_email Man page Source code
set_language_settings Man page Source code
set_odkc_connection Man page Source code
text_2_plot Man page Source code
upload_odkc_csv_attachment Man page Source code
xlsx_download_server Man page Source code
xlsx_download_ui Man page Source code
Thaliehln/timci documentation built on April 8, 2024, 3:38 p.m.