run_rmarkdown_rctls: Run Rmarkdown files
In Thaliehln/timci: Data management and visualisation for the TIMCI project

run_rmarkdown_rctls

R Documentation

Run Rmarkdown files

Description

This function runs several Rmarkdown files to generate standardised automated reports for the longitudinal study (LS) and the randomised controlled trial (RCT) for the Tools for Integrated Management of Childhood Illnesses (TIMCI) project.

Usage

run_rmarkdown_rctls(
  rctls_pid,
  rctls_pp,
  research_facilities,
  report_dir,
  participant_zip,
  mdb_dir,
  path_dir,
  start_date = NULL,
  end_date = NULL,
  lock_date = NULL,
  sample_size = 1e+05,
  short = FALSE
)

Arguments

`rctls_pid`	Numeric value that refers ID of the RCT/LS ODK Central project
`rctls_pp`	Passphrase
`research_facilities`	Dataframe that contains the research facilities
`report_dir`	Path to the output folder for the generated Rmarkdown reports
`participant_zip`	Path to the encrypted zip archive that stores participant data
`mdb_dir`	Path to the output folder for the RCT / LS database exports
`path_dir`	Path to the output folder for the M&E exports to be shared with PATH
`start_date`	RCT/LS data collection start date (optional)
`end_date`	RCT/LS data collection end date (optional)
`lock_date`	RCT/LS data collection cleaning end date for database lock (optional)
`sample_size`	Numeric value, sample size for RCT/LS enrolment
`short`	Short version of the export